RNF224

Chr 9

ring finger protein 224

RNF224 encodes a protein predicted to bind zinc ions. Mutations in this gene have been associated with neurodevelopmental disorders, though the clinical spectrum is still being defined. The gene shows tolerance to loss-of-function variation (pLI 0.04, LOEUF 1.76), and inheritance patterns for associated conditions remain unclear.

ResearchSummary from RefSeq
GOFmechanismLOEUF 1.76
Clinical SummaryRNF224
Population Constraint (gnomAD)
Low constraint (pLI 0.04) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
95 unique Pathogenic / Likely Pathogenic· 57 VUS of 158 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.76LOEUF
pLI 0.040
Z-score 0.47
OE 0.70 (0.281.76)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.23Z-score
OE missense 1.07 (0.911.25)
105 obs / 98.5 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.70 (0.281.76)
00.351.4
Missense OE1.07 (0.911.25)
00.61.4
Synonymous OE1.00
01.21.6
LoF obs/exp: 2 / 2.9Missense obs/exp: 105 / 98.5Syn Z: 0.01
DN
0.5968th %ile
GOF
0.78top 25%
LOF
0.3260th %ile

The highest-scoring mechanism for this gene is gain-of-function.

GOFprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

158 submitted variants in ClinVar

Classification Summary

Pathogenic88
Likely Pathogenic7
VUS57
Likely Benign1
Benign1
Conflicting3
88
Pathogenic
7
Likely Pathogenic
57
VUS
1
Likely Benign
1
Benign
3
Conflicting

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
88
0
88
Likely Pathogenic
0
0
7
0
7
VUS
0
49
8
0
57
Likely Benign
0
0
0
1
1
Benign
0
0
1
0
1
Conflicting
3
Total0491041157

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

RNF224 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
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