RNF114

Chr 20

ring finger protein 114

Also known as: PSORS12, ZNF313

The protein functions as an E3 ubiquitin ligase that regulates multiple cellular processes including cell cycle progression, immune responses, and NF-kappa-B signaling by promoting ubiquitination and degradation of various target proteins. Pathogenic variants in RNF114 cause autosomal recessive intellectual disability with microcephaly, seizures, and spasticity, typically presenting in infancy with developmental delays and neurological symptoms. The gene shows relatively low constraint to loss-of-function variants, consistent with its recessive inheritance pattern.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
18
Pubs (1 yr)
10
P/LP submissions
0%
P/LP missense
0.80
LOEUF
GOF
Mechanism· predicted
Clinical SummaryRNF114
Population Constraint (gnomAD)
Constrained for loss-of-function variants (OE-LoF 0.35) despite low pLI — interpret in context.
📋
ClinVar Variants
10 unique Pathogenic / Likely Pathogenic· 35 VUS of 54 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.80LOEUF
pLI 0.052
Z-score 2.05
OE 0.35 (0.170.80)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
1.03Z-score
OE missense 0.75 (0.640.89)
105 obs / 139.2 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.35 (0.170.80)
00.351.4
Missense OE0.75 (0.640.89)
00.61.4
Synonymous OE1.02
01.21.6
LoF obs/exp: 4 / 11.5Missense obs/exp: 105 / 139.2Syn Z: -0.13
DN
0.6066th %ile
GOF
0.6638th %ile
LOF
0.3261th %ile

The highest-scoring mechanism for this gene is gain-of-function.

GOFprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

54 submitted variants in ClinVar

Classification Summary

Pathogenic8
Likely Pathogenic2
VUS35
Likely Benign3
8
Pathogenic
2
Likely Pathogenic
35
VUS
3
Likely Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
8
0
8
Likely Pathogenic
0
0
2
0
2
VUS
0
32
3
0
35
Likely Benign
0
3
0
0
3
Benign
0
0
0
0
0
Total03513048

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

RNF114 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
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