RGS3

Chr 9

regulator of G protein signaling 3

Also known as: C2PA, RGP3

The protein is a GTPase-activating protein that down-regulates G-protein signaling by increasing GTPase activity of G-alpha subunits, driving them into their inactive GDP-bound form. Mutations cause autosomal dominant developmental and epileptic encephalopathy with onset in infancy, characterized by seizures, developmental delay, and intellectual disability. The gene is highly constrained against loss-of-function variants (pLI near 0, LOEUF 0.645), indicating that complete loss of protein function is likely not tolerated.

OMIMResearchSummary from RefSeq, UniProt
MultiplemechanismLOEUF 0.65
Clinical SummaryRGS3
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.65LOEUF
pLI 0.000
Z-score 3.78
OE 0.47 (0.350.65)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
1.03Z-score
OE missense 0.89 (0.830.95)
635 obs / 712.3 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.47 (0.350.65)
00.351.4
Missense OE0.89 (0.830.95)
00.61.4
Synonymous OE1.01
01.21.6
LoF obs/exp: 28 / 59.5Missense obs/exp: 635 / 712.3Syn Z: -0.19
DN
0.6551th %ile
GOF
0.7027th %ile
LOF
0.4332th %ile

This gene has evidence for multiple mechanisms of pathogenicity (gain-of-function and dominant-negative). Both the Badonyi & Marsh prediction and the broader genomic evidence point to gain-of-function as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

GOFprediction above median
DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

RGS3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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