RFX7

Chr 15AD

regulatory factor X7

Also known as: MRD71, RFXDC2

RFX7 encodes a transcription factor that activates target genes including PDCD4, PIK3IP1, MXD4, PNRC1, and RFX5, and functions in natural killer cell maintenance and neural tube ciliogenesis. Mutations cause autosomal dominant intellectual developmental disorder with behavioral abnormalities. This gene is highly constrained against loss-of-function variants (pLI=1.0, LOEUF=0.13), indicating intolerance to protein-truncating mutations.

OMIMResearchSummary from RefSeq, OMIM, UniProt
LOFmechanismADLOEUF 0.131 OMIM phenotype
Clinical SummaryRFX7
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Gene-Disease Validity (ClinGen)
complex neurodevelopmental disorder · ADDefinitive

Definitive — sufficient evidence for diagnostic panels

Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 1.00). One damaged copy is likely sufficient to cause disease.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint
0.13LOEUF
pLI 1.000
Z-score 6.13
OE 0.04 (0.020.13)
Highly constrained

Among the most LoF-intolerant genes (~top 3%)

Missense Constraint
1.60Z-score
OE missense 0.84 (0.780.89)
637 obs / 761.2 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.04 (0.020.13)
00.351.4
Missense OE0.84 (0.780.89)
00.61.4
Synonymous OE1.02
01.21.6
LoF obs/exp: 2 / 47.6Missense obs/exp: 637 / 761.2Syn Z: -0.25
Curated Mechanism (G2P)Gene2Phenotype (DDG2P) ↗
moderateRFX7-related neurodevelopmental disorder with autism and other behavioural abnormalitiesLOFAD
DN
0.2199th %ile
GOF
0.1799th %ile
LOF
0.84top 5%

The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).

LOFprediction above median · LOEUF 0.13

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

RFX7 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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