RFX5

Chr 1AR

regulatory factor X5

Also known as: MHC2D3, MHC2D5

A lack of MHC-II expression results in a severe immunodeficiency syndrome called MHC-II deficiency, or the bare lymphocyte syndrome (BLS; MIM 209920). At least 4 complementation groups have been identified in B-cell lines established from patients with BLS. The molecular defects in complementation groups B, C, and D all lead to a deficiency in RFX, a nuclear protein complex that binds to the X box of MHC-II promoters. The lack of RFX binding activity in complementation group C results from mutations in the RFX5 gene encoding the 75-kD subunit of RFX (Steimle et al., 1995). RFX5 is the fifth member of the growing family of DNA-binding proteins sharing a novel and highly characteristic DNA-binding domain called the RFX motif. Multiple alternatively spliced transcript variants have been found but the full-length natures of only two have been determined. [provided by RefSeq, Jul 2008]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

?MHC class II deficiency 5MIM #620818
AR
MHC class II deficiency 3MIM #620816
AR

Clinical highlights

Gene-disease validity (ClinGen)
MHC class II deficiency · ARDefinitivesufficient evidence for diagnostic panels
0
Active trials
27
Pubs (1 yr)
P/LP submissions
P/LP missense
1.10
LOEUF
Mechanism

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.10LOEUF
pLI 0.000
Z-score 1.14
OE 0.76 (0.531.10)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
0.48Z-score
OE missense 0.93 (0.841.02)
314 obs / 338.7 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.76 (0.531.10)
00.351.4
Missense OE?0.93 (0.841.02)
00.61.4
Synonymous OE?0.75
01.21.6
LoF obs/exp: 20 / 26.3Missense obs/exp: 314 / 338.7Syn Z: 2.23

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

RFX5 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →