RFT1

Chr 3

RFT1 glycolipid translocator homolog

Also known as: CDG1N, SLC76A1

This gene encodes an enzyme which catalyzes the translocation of the Man(5)GlcNAc (2)-PP-Dol intermediate from the cytoplasmic to the luminal side of the endoplasmic reticulum membrane in the pathway for the N-glycosylation of proteins. Mutations in this gene are associated with congenital disorder of glycosylation type In.[provided by RefSeq, Dec 2008]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtCongenital disorder of glycosylation 1N

Clinical highlights

Gene-disease validity (ClinGen)
RFT1-congenital disorder of glycosylation · ARModerateconsider for supplementary testing
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
28
Pubs (1 yr)
P/LP submissions
P/LP missense
1.09
LOEUF
LOF
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.09LOEUF
pLI 0.000
Z-score 1.15
OE 0.77 (0.561.09)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
0.97Z-score
OE missense 0.84 (0.760.94)
248 obs / 294.7 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.77 (0.561.09)
00.351.4
Missense OE?0.84 (0.760.94)
00.61.4
Synonymous OE?0.96
01.21.6
LoF obs/exp: 23 / 29.8Missense obs/exp: 248 / 294.7Syn Z: 0.33

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

RFT1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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