RELN

Chr 7ADAR

reelin

Also known as: ETL7, LIS2, PRO1598, RL

This gene encodes a large secreted extracellular matrix protein thought to control cell-cell interactions critical for cell positioning and neuronal migration during brain development. This protein may be involved in schizophrenia, autism, bipolar disorder, major depression and in migration defects associated with temporal lobe epilepsy. Mutations of this gene are associated with autosomal recessive lissencephaly with cerebellar hypoplasia. Two transcript variants encoding distinct isoforms have been identified for this gene. Other transcript variants have been described but their full length nature has not been determined. [provided by RefSeq, Jul 2008]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

{Epilepsy, familial temporal lobe, 7}MIM #616436
AD
Lissencephaly 2 (Norman-Roberts type)MIM #257320
AR

Clinical highlights

Gene-disease validity (ClinGen)
lissencephaly with cerebellar hypoplasia · ARDefinitivesufficient evidence for diagnostic panels2 gene-disease associations curated in total
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
63
Pubs (1 yr)
P/LP submissions
P/LP missense
0.18
LOEUF· LoF intol.
LOF
Mechanism· G2P

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.18LOEUF
pLI 1.000
Z-score 11.05
OE 0.12 (0.090.18)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint?
2.25Z-score
OE missense 0.85 (0.820.89)
1577 obs / 1849.2 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.12 (0.090.18)
00.351.4
Missense OE?0.85 (0.820.89)
00.61.4
Synonymous OE?1.05
01.21.6
LoF obs/exp: 23 / 185.3Missense obs/exp: 1577 / 1849.2Syn Z: -1.09

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

RELN · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.