RBMY1F

Chr Y

RNA binding motif protein Y-linked family 1 member F

Also known as: YRRM2

The protein is an RNA-binding protein that participates in pre-mRNA splicing during spermatogenesis and is required for sperm development. Mutations cause male infertility due to azoospermia, with inheritance following a Y-linked pattern since the gene is located on the Y chromosome. The gene has multiple functional copies in the AZFb region and shows relatively low constraint to loss-of-function variants.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
0
Pubs (1 yr)
75
P/LP submissions
P/LP missense
1.88
LOEUF
Mechanism
Clinical SummaryRBMY1F
Population Constraint (gnomAD)
Constrained for loss-of-function variants (OE-LoF 0.00) despite low pLI — interpret in context.
📋
ClinVar Variants
75 unique Pathogenic / Likely Pathogenic· 13 VUS of 99 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.88LOEUF
pLI 0.296
Z-score 0.36
OE 0.00 (0.001.88)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.52Z-score
OE missense 0.00 (0.001.27)
0 obs / 2.2 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.00 (0.001.88)
00.351.4
Missense OE0.00 (0.001.27)
00.61.4
Synonymous OE0.00
01.21.6
LoF obs/exp: 0 / 0.1Missense obs/exp: 0 / 2.2Syn Z: 0.65

ClinVar Variant Classifications

99 submitted variants in ClinVar

Classification Summary

Pathogenic72
Likely Pathogenic3
VUS13
Likely Benign8
Benign3
72
Pathogenic
3
Likely Pathogenic
13
VUS
8
Likely Benign
3
Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories· variant type breakdown unavailable

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
72
Likely Pathogenic
3
VUS
13
Likely Benign
8
Benign
3
Total99

Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

RBMY1F · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
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Key Publications
Landmark & review papers · by relevance
PubMed
Top 1 results · since 2015Search PubMed ↗
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC

No open access results found