RBMY1D

Chr Y

RNA binding motif protein Y-linked family 1 member D

Also known as: RBM1, RBM2, YRRM1, YRRM2, hRBMY

This gene encodes an RNA-binding protein that functions as a splicing factor during spermatogenesis and is required for sperm development. Mutations cause male infertility due to azoospermia or severe oligospermia. The gene is located on the Y chromosome and follows Y-linked inheritance, affecting only males.

ResearchSummary from RefSeq, UniProt
DNmechanism
Clinical SummaryRBMY1D
📋
ClinVar Variants
73 unique Pathogenic / Likely Pathogenic· 6 VUS of 89 total submissions

Population Genetics & Constraint

Constraint data not available from gnomAD.

DN
0.76top 25%
GOF
0.4677th %ile
LOF
0.3454th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

89 submitted variants in ClinVar

Classification Summary

Pathogenic70
Likely Pathogenic3
VUS6
Likely Benign6
Benign4
70
Pathogenic
3
Likely Pathogenic
6
VUS
6
Likely Benign
4
Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories· variant type breakdown unavailable

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
70
Likely Pathogenic
3
VUS
6
Likely Benign
6
Benign
4
Total89

Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

RBMY1D · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
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