RARS1

Chr 5AR

arginyl-tRNA synthetase 1

Also known as: ArgRS, DALRD1, HLD9, RARS

Arginyl-tRNA synthetase catalyzes the aminoacylation of tRNA by arginine, a critical step in protein synthesis that links amino acids with their corresponding nucleotide triplets. Mutations in RARS1 cause hypomyelinating leukodystrophy 9, an autosomal recessive disorder. The pathogenic mechanism appears to be dominant negative, where mutant proteins interfere with normal cellular function.

OMIMResearchSummary from RefSeq, OMIM, UniProt, Mechanism
LOFmechanismARLOEUF 0.771 OMIM phenotype
Clinical SummaryRARS1
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Gene-Disease Validity (ClinGen)
hypomyelinating leukodystrophy 9 · ARDefinitive

Definitive — sufficient evidence for diagnostic panels

Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.77LOEUF
pLI 0.000
Z-score 2.64
OE 0.52 (0.360.77)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
0.54Z-score
OE missense 0.92 (0.841.01)
319 obs / 347.5 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.52 (0.360.77)
00.351.4
Missense OE0.92 (0.841.01)
00.61.4
Synonymous OE0.98
01.21.6
LoF obs/exp: 18 / 34.8Missense obs/exp: 319 / 347.5Syn Z: 0.19
Curated Mechanism (G2P)Gene2Phenotype (DDG2P) ↗
definitiveRARS1 related hypomyelinating leukodystrophyLOFAR

Predictions shown for reference only — model trained on dominant genes, not applicable to AR conditions.

DN
0.6744th %ile
GOF
0.6345th %ile
LOF
0.3358th %ile

The Badonyi & Marsh prediction model was trained exclusively on dominant disease genes. Predictions are not reliable for genes with autosomal recessive inheritance and are shown at reduced opacity for reference only.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

RARS1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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