RAP1GDS1

Chr 4AR

Rap1 GTPase-GDP dissociation stimulator 1

Also known as: GDS1, SmgGDS

The smg GDP dissociation stimulator (smgGDS) protein is a stimulatory GDP/GTP exchange protein with GTPase activity (Riess et al., 1993 [PubMed 8262526]).[supplied by OMIM, Feb 2010]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Alfadhel syndromeMIM #620655
AR

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
1
Pubs (1 yr)
P/LP submissions
P/LP missense
0.34
LOEUF· LoF intol.
Mechanism

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.34LOEUF
pLI 0.933
Z-score 4.29
OE 0.16 (0.080.34)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint?
1.07Z-score
OE missense 0.83 (0.750.92)
252 obs / 304.6 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.16 (0.080.34)
00.351.4
Missense OE?0.83 (0.750.92)
00.61.4
Synonymous OE?0.89
01.21.6
LoF obs/exp: 5 / 30.6Missense obs/exp: 252 / 304.6Syn Z: 0.93

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

RAP1GDS1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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