PYCR1

Chr 17AR

pyrroline-5-carboxylate reductase 1

Also known as: ARCL2B, ARCL3B, P5C, P5CR, PIG45, PP222, PRO3, PYCR

This gene encodes an enzyme that catalyzes the NAD(P)H-dependent conversion of pyrroline-5-carboxylate to proline. This enzyme may also play a physiologic role in the generation of NADP(+) in some cell types. The protein forms a homopolymer and localizes to the mitochondrion. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2013]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Cutis laxa, autosomal recessive, type IIBMIM #612940
AR
Cutis laxa, autosomal recessive, type IIIBMIM #614438
AR

Clinical highlights

Gene-disease validity (ClinGen)
autosomal recessive cutis laxa type 2B · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
51
Pubs (1 yr)
P/LP submissions
P/LP missense
1.26
LOEUF
LOF
Mechanism· G2P
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GeneReview available — PYCR1
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.26LOEUF
pLI 0.000
Z-score 0.99
OE 0.67 (0.381.26)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
0.17Z-score
OE missense 0.97 (0.861.09)
187 obs / 193.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.67 (0.381.26)
00.351.4
Missense OE?0.97 (0.861.09)
00.61.4
Synonymous OE?0.98
01.21.6
LoF obs/exp: 7 / 10.4Missense obs/exp: 187 / 193.8Syn Z: 0.17

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PYCR1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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