PUS1

Chr 12

pseudouridine synthase 1

Also known as: MLASA1

This gene encodes a pseudouridine synthase that converts uridine to pseudouridine once it has been incorporated into an RNA molecule. The encoded enzyme may play an essential role in tRNA function and in stabilizing the secondary and tertiary structure of many RNAs. A mutation in this gene has been linked to mitochondrial myopathy and sideroblastic anemia. Alternate splicing results in multiple transcript variants.[provided by RefSeq, Sep 2009]

GeneReviewsResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtMyopathy with lactic acidosis and sideroblastic anemia 1

Clinical highlights

Gene-disease validity (ClinGen)
mitochondrial disease · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
28
Pubs (1 yr)
P/LP submissions
P/LP missense
0.85
LOEUF
LOF
Mechanism· G2P
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GeneReview available — PUS1
Authoritative clinical overview · Recommended first read
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Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.85LOEUF
pLI 0.002
Z-score 1.98
OE 0.46 (0.260.85)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
0.29Z-score
OE missense 0.95 (0.861.05)
250 obs / 263.3 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.46 (0.260.85)
00.351.4
Missense OE?0.95 (0.861.05)
00.61.4
Synonymous OE?1.02
01.21.6
LoF obs/exp: 7 / 15.4Missense obs/exp: 250 / 263.3Syn Z: -0.15

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PUS1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.