PTPRN2

Chr 7

protein tyrosine phosphatase receptor type N2

Also known as: IA-2beta, IAR, ICAAR, PTPRP, R-PTP-N2

This gene encodes a protein with sequence similarity to receptor-like protein tyrosine phosphatases. However, tyrosine phosphatase activity has not been experimentally validated for this protein. Studies of the rat ortholog suggest that the encoded protein may instead function as a phosphatidylinositol phosphatase with the ability to dephosphorylate phosphatidylinositol 3-phosphate and phosphatidylinositol 4,5-diphosphate, and this function may be involved in the regulation of insulin secretion. This protein has been identified as an autoantigen in insulin-dependent diabetes mellitus. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2015]

OMIMResearchGenerating clinical summary…
0
Active trials
26
Pubs (1 yr)
P/LP submissions
P/LP missense
0.57
LOEUF
Multiple*
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.57LOEUF
pLI 0.000
Z-score 4.04
OE 0.39 (0.270.57)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
0.06Z-score
OE missense 0.99 (0.931.06)
630 obs / 634.1 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.39 (0.270.57)
00.351.4
Missense OE?0.99 (0.931.06)
00.61.4
Synonymous OE?0.98
01.21.6
LoF obs/exp: 20 / 51.1Missense obs/exp: 630 / 634.1Syn Z: 0.24

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PTPRN2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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