PTDSS1

Chr 8

phosphatidylserine synthase 1

Also known as: LMHD, PSS1, PSSA

The protein encoded by this gene catalyzes the formation of phosphatidylserine from either phosphatidylcholine or phosphatidylethanolamine. Phosphatidylserine localizes to the mitochondria-associated membrane of the endoplasmic reticulum, where it serves a structural role as well as a signaling role. Defects in this gene are a cause of Lenz-Majewski hyperostotic dwarfism. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Mar 2014]

GeneReviewsResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtLenz-Majewski hyperostotic dwarfism

Clinical highlights

Interpreting a novel variant
Gain of function is the curated mechanism (Gene2Phenotype), so a variant that simply removes the protein may not be the pathogenic class here — missense variants in functional domains often carry more weight.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
20
Pubs (1 yr)
P/LP submissions
P/LP missense
0.45
LOEUF
GOF
Mechanism· G2P
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GeneReview available — PTDSS1
Authoritative clinical overview · Recommended first read
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Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.45LOEUF
pLI 0.151
Z-score 3.95
OE 0.25 (0.140.45)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
2.38Z-score
OE missense 0.59 (0.520.67)
158 obs / 267.4 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.25 (0.140.45)
00.351.4
Missense OE?0.59 (0.520.67)
00.61.4
Synonymous OE?0.94
01.21.6
LoF obs/exp: 8 / 32.2Missense obs/exp: 158 / 267.4Syn Z: 0.47

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PTDSS1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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