PSME4

Chr 2

proteasome activator subunit 4

Also known as: Blm10, PA200, hBlm10

This protein recognizes acetylated histones and activates the proteasome to promote ATP- and ubiquitin-independent degradation of core histones during spermatogenesis and DNA damage response. Mutations cause autosomal recessive developmental and epileptic encephalopathy with microcephaly. The gene is highly constrained against loss-of-function variants, indicating intolerance to protein disruption.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
4
Pubs (1 yr)
10
P/LP submissions
0%
P/LP missense
0.18
LOEUF· LoF intol.
LOF
Mechanism· predicted
Clinical SummaryPSME4
Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 1.00). One damaged copy is likely sufficient to cause disease.
📋
ClinVar Variants
10 unique Pathogenic / Likely Pathogenic· 197 VUS of 269 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint
0.18LOEUF
pLI 1.000
Z-score 8.89
OE 0.11 (0.070.18)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint
2.27Z-score
OE missense 0.79 (0.750.84)
757 obs / 954.3 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios
LoF OE0.11 (0.070.18)
00.351.4
Missense OE0.79 (0.750.84)
00.61.4
Synonymous OE1.09
01.21.6
LoF obs/exp: 13 / 116.6Missense obs/exp: 757 / 954.3Syn Z: -1.29
DN
0.3097th %ile
GOF
0.4085th %ile
LOF
0.70top 10%

The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).

LOFprediction above median · LOEUF 0.18

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.

ClinVar Variant Classifications

269 submitted variants in ClinVar

Classification Summary

Pathogenic9
Likely Pathogenic1
VUS197
Likely Benign10
Benign1
9
Pathogenic
1
Likely Pathogenic
197
VUS
10
Likely Benign
1
Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
9
0
9
Likely Pathogenic
0
0
1
0
1
VUS
0
196
1
0
197
Likely Benign
0
2
3
5
10
Benign
0
0
1
0
1
Total0198155218

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

PSME4 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
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