PSIP1

Chr 9

PC4 and SRSF1 interacting protein 1

Also known as: DFS70, LEDGF, PAIP, PSIP2, p52, p75

PSIP1 encodes a transcriptional coactivator that regulates neuroepithelial stem cell differentiation and neurogenesis, and also functions in pre-mRNA splicing and lens development. Mutations cause autosomal dominant developmental delay with intellectual disability, seizures, and distinctive facial features, with onset in early childhood. This gene is highly constrained against loss-of-function variants in the general population.

OMIMResearchSummary from RefSeq, UniProt
LOFmechanismLOEUF 0.27
Clinical SummaryPSIP1
Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 1.00). One damaged copy is likely sufficient to cause disease.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint
0.27LOEUF
pLI 0.997
Z-score 4.81
OE 0.12 (0.060.27)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint
0.11Z-score
OE missense 0.98 (0.891.09)
262 obs / 266.9 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.12 (0.060.27)
00.351.4
Missense OE0.98 (0.891.09)
00.61.4
Synonymous OE1.31
01.21.6
LoF obs/exp: 4 / 34.4Missense obs/exp: 262 / 266.9Syn Z: -2.26
DN
0.2599th %ile
GOF
0.2298th %ile
LOF
0.81top 5%

The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).

LOFprediction above median · LOEUF 0.27

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PSIP1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC