PSD3

Chr 8

pleckstrin and Sec7 domain containing 3

Also known as: EFA6D, EFA6R, HCA67

Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in vesicle-mediated transport. Predicted to be located in membrane. Predicted to be active in glutamatergic synapse; postsynapse; and ruffle membrane. [provided by Alliance of Genome Resources, Jun 2026]

OMIMResearchGenerating clinical summary…

Clinical highlights

Gene-disease validity (ClinGen)
antecubital pterygium syndrome · ADLimitednot for standalone diagnostic reporting
Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
11
Pubs (1 yr)
P/LP submissions
P/LP missense
0.45
LOEUF
Multiple*
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.45LOEUF
pLI 0.009
Z-score 4.55
OE 0.28 (0.180.45)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
-1.50Z-score
OE missense 1.18 (1.101.25)
666 obs / 565.9 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.28 (0.180.45)
00.351.4
Missense OE?1.18 (1.101.25)
00.61.4
Synonymous OE?1.31
01.21.6
LoF obs/exp: 13 / 46.4Missense obs/exp: 666 / 565.9Syn Z: -3.57

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PSD3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →