PRXL2C

Chr 9

peroxiredoxin like 2C

Also known as: AAED1, C9orf21

The protein positively regulates ERK1/2 signaling and AKT1 activation, leading to HIF1A upregulation and enhanced glycolysis. Mutations cause disease through a dominant-negative mechanism, though specific clinical phenotypes associated with PRXL2C mutations have not been established. The gene appears highly tolerant to loss-of-function mutations based on constraint metrics.

ResearchSummary from RefSeq, UniProt, Mechanism
DNmechanismLOEUF 1.80
Clinical SummaryPRXL2C
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.80LOEUF
pLI 0.000
Z-score -0.40
OE 1.15 (0.701.80)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.17Z-score
OE missense 0.95 (0.791.14)
83 obs / 87.4 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE1.15 (0.701.80)
00.351.4
Missense OE0.95 (0.791.14)
00.61.4
Synonymous OE0.70
01.21.6
LoF obs/exp: 10 / 8.7Missense obs/exp: 83 / 87.4Syn Z: 1.33
DN
0.7034th %ile
GOF
0.6051th %ile
LOF
0.3067th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PRXL2C · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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