PRRT2

Chr 16

proline rich transmembrane protein 2

Also known as: BFIC2, BFIS2, DSPB3, DYT10, EKD1, FICCA, ICCA, IFITMD1

This gene encodes a transmembrane protein containing a proline-rich domain in its N-terminal half. Studies in mice suggest that it is predominantly expressed in brain and spinal cord in embryonic and postnatal stages. Mutations in this gene are associated with episodic kinesigenic dyskinesia-1. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2012]

GeneReviewsResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtEpisodic kinesigenic dyskinesia 1
UniProtConvulsions, familial infantile, with paroxysmal choreoathetosis
UniProtSeizures, benign familial infantile, 2

Clinical highlights

Management implications
Paroxysmal kinesigenic dyskinesia responds dramatically to low-dose carbamazepine.A low-dose sodium-channel blocker (oxcarbazepine or carbamazepine) is exquisitely effective for PRRT2 PKD.
Gene-disease validity (ClinGen)
infantile convulsions and choreoathetosis · ADDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
2
Active trials
54
Pubs (1 yr)
P/LP submissions
P/LP missense
0.56
LOEUF
LOF
Mechanism· G2P
📖
GeneReview available — PRRT2
Authoritative clinical overview · Recommended first read
Open GeneReview ↗
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Treatment implicationsTreatable
PRRT2-related paroxysmal kinesigenic dyskinesia / benign familial infantile epilepsy

A low-dose sodium-channel blocker (oxcarbazepine or carbamazepine) is exquisitely effective for PRRT2 PKD.

Paroxysmal kinesigenic dyskinesia responds dramatically to low-dose carbamazepine.

Treatment of choice

low-dose oxcarbazepine or carbamazepine

Ebrahimi-Fakhari et al. 2015 (GeneReviews). Confirm with a neurologist and current guidelines. Functional class (GOF/LOF) is from published functional/segregation data, never inferred from the variant. As of 2026-07. Curated from the clinical genetics/neurology literature (cited per gene). Decision-support, not prescribing.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.56LOEUF
pLI 0.579
Z-score 2.55
OE 0.18 (0.070.56)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
0.23Z-score
OE missense 0.96 (0.851.07)
213 obs / 222.5 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.18 (0.070.56)
00.351.4
Missense OE?0.96 (0.851.07)
00.61.4
Synonymous OE?1.00
01.21.6
LoF obs/exp: 2 / 11.2Missense obs/exp: 213 / 222.5Syn Z: -0.00

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PRRT2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.