PRR7

Chr 5

proline rich 7, synaptic

PRR7 encodes a protein that acts as a synapse-to-nucleus messenger promoting NMDA receptor-mediated excitotoxicity and regulates transcription factor JUN activity by inhibiting its degradation and promoting its phosphorylation. The gene is highly constrained against loss-of-function variants (pLI = 0.87, LOEUF = 0.45), but no specific human disease has been definitively associated with PRR7 mutations to date. Given its role in neuronal excitotoxicity and apoptosis, mutations would likely follow an autosomal inheritance pattern and potentially affect the central nervous system.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
7
Pubs (1 yr)
57
P/LP submissions
0%
P/LP missense
0.45
LOEUF
Mechanism
Clinical SummaryPRR7
Population Constraint (gnomAD)
Moderately constrained gene (pLI 0.87) — some intolerance to loss-of-function variants.
📋
ClinVar Variants
55 unique Pathogenic / Likely Pathogenic· 49 VUS of 106 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
0.45LOEUF
pLI 0.869
Z-score 2.39
OE 0.00 (0.000.45)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
1.29Z-score
OE missense 0.69 (0.580.82)
93 obs / 135.4 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.00 (0.000.45)
00.351.4
Missense OE0.69 (0.580.82)
00.61.4
Synonymous OE1.25
01.21.6
LoF obs/exp: 0 / 6.6Missense obs/exp: 93 / 135.4Syn Z: -1.53

ClinVar Variant Classifications

106 submitted variants in ClinVar

Classification Summary

Pathogenic50
Likely Pathogenic5
VUS49
Likely Benign1
50
Pathogenic
5
Likely Pathogenic
49
VUS
1
Likely Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
50
0
50
Likely Pathogenic
0
0
5
0
5
VUS
0
38
11
0
49
Likely Benign
0
0
1
0
1
Benign
0
0
0
0
0
Total038670105

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

PRR7 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →