PRPS1

Chr XXLRX-linked

phosphoribosyl pyrophosphate synthetase 1

Also known as: ARTS, CMTX5, DFN2, DFNX1, PPRibP, PRS-I, PRSI

This gene encodes an enzyme that catalyzes the phosphoribosylation of ribose 5-phosphate to 5-phosphoribosyl-1-pyrophosphate, which is necessary for purine metabolism and nucleotide biosynthesis. Defects in this gene are a cause of phosphoribosylpyrophosphate synthetase superactivity, Charcot-Marie-Tooth disease X-linked recessive type 5 and Arts Syndrome. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Feb 2011]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Arts syndromeMIM #301835
XLR
Charcot-Marie-Tooth disease, X-linked recessive, 5MIM #311070
XLR
Deafness, X-linked 1MIM #304500
X-linked
Gout, PRPS-relatedMIM #300661
XLR
Phosphoribosylpyrophosphate synthetase superactivityMIM #300661
XLR

Clinical highlights

Gene-disease validity (ClinGen)
phosphoribosylpyrophosphate synthetase superactivity · XLLimitednot for standalone diagnostic reporting2 gene-disease associations curated in total
Interpreting a novel variant
Curated mechanisms (Gene2Phenotype) include both loss of function and gain of function. Which applies is variant-dependent — do not assume a null variant is, or isn’t, the pathogenic class without checking the specific variant.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
31
Pubs (1 yr)
P/LP submissions
P/LP missense
0.38
LOEUF
Multiple*
Mechanism· G2P
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GeneReview available — PRPS1
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Dual constrained — LoF & missense intolerant
LoF Constraint?
0.38LOEUF
pLI 0.915
Z-score 2.61
OE 0.00 (0.000.38)
Highly constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
3.73Z-score
OE missense 0.08 (0.050.13)
10 obs / 129.5 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios?
LoF OE?0.00 (0.000.38)
00.351.4
Missense OE?0.08 (0.050.13)
00.61.4
Synonymous OE?0.91
01.21.6
LoF obs/exp: 0 / 7.9Missense obs/exp: 10 / 129.5Syn Z: 0.48

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PRPS1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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