PRPH2

Chr 6

peripherin 2

Also known as: AOFMD, AVMD, CACD2, DS, MDBS1, RDS, RP7, TSPAN22

The protein encoded by this gene is a member of the transmembrane 4 superfamily, also known as the tetraspanin family. Most of these members are cell-surface proteins that are characterized by the presence of four hydrophobic domains. The proteins mediate signal transduction events that play a role in the regulation of cell development, activation, growth and motility. This encoded protein is a cell surface glycoprotein found in the outer segment of both rod and cone photoreceptor cells. It may function as an adhesion molecule involved in stabilization and compaction of outer segment disks or in the maintenance of the curvature of the rim. This protein is essential for disk morphogenesis. Defects in this gene are associated with both central and peripheral retinal degenerations. Some of the various phenotypically different disorders are autosomal dominant retinitis pigmentosa, progressive macular degeneration, macular dystrophy and retinitis pigmentosa digenic. [provided by RefSeq, Jul 2008]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtRetinitis pigmentosa 7
UniProtRetinitis punctata albescens
UniProtMacular dystrophy, vitelliform, 3
UniProtMacular dystrophy, patterned, 1

Clinical highlights

Gene-disease validity (ClinGen)
PRPH2-related retinopathy · SDDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
47
Pubs (1 yr)
P/LP submissions
P/LP missense
0.67
LOEUF
LOF*
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.67LOEUF
pLI 0.116
Z-score 2.44
OE 0.29 (0.140.67)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
0.10Z-score
OE missense 0.98 (0.871.10)
189 obs / 193.0 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.29 (0.140.67)
00.351.4
Missense OE?0.98 (0.871.10)
00.61.4
Synonymous OE?1.05
01.21.6
LoF obs/exp: 4 / 13.8Missense obs/exp: 189 / 193.0Syn Z: -0.39

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PRPH2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.