PRPF6

Chr 20AD

pre-mRNA processing factor 6

Also known as: ANT-1, ANT1, C20orf14, Prp6, RP60, SNRNP102, TOM, U5-102K

The protein encoded by this gene appears to be involved in pre-mRNA splicing, possibly acting as a bridging factor between U5 and U4/U6 snRNPs in formation of the spliceosome. The encoded protein also can bind androgen receptor, providing a link between transcriptional activation and splicing. [provided by RefSeq, Jul 2008]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Retinitis pigmentosa 60MIM #613983
AD

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
8
Pubs (1 yr)
P/LP submissions
P/LP missense
0.44
LOEUF
Multiple*
Mechanism· predicted
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GeneReview available — PRPF6
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Missense constrained — critical functional residues
LoF Constraint?
0.44LOEUF
pLI 0.003
Z-score 4.78
OE 0.29 (0.190.44)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
4.85Z-score
OE missense 0.43 (0.380.47)
242 obs / 567.1 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios?
LoF OE?0.29 (0.190.44)
00.351.4
Missense OE?0.43 (0.380.47)
00.61.4
Synonymous OE?1.06
01.21.6
LoF obs/exp: 15 / 52.3Missense obs/exp: 242 / 567.1Syn Z: -0.75

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PRPF6 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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