PROM1

Chr 4ADAR

prominin 1

Also known as: AC133, CD133, CORD12, MCDR2, MSTP061, PROML1, RP41, STGD4

This gene encodes a pentaspan transmembrane glycoprotein. The protein localizes to membrane protrusions and is often expressed on adult stem cells, where it is thought to function in maintaining stem cell properties by suppressing differentiation. Mutations in this gene have been shown to result in retinitis pigmentosa and Stargardt disease. Expression of this gene is also associated with several types of cancer. This gene is expressed from at least five alternative promoters that are expressed in a tissue-dependent manner. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Mar 2009]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Cone-rod dystrophy 12MIM #612657
ADAR
Macular dystrophy, retinal, 2MIM #608051
AD
Retinitis pigmentosa 41MIM #612095
AR
Stargardt disease 4MIM #603786
AD

Clinical highlights

Gene-disease validity (ClinGen)
PROM1-related dominant retinopathy · ADDefinitivesufficient evidence for diagnostic panels2 gene-disease associations curated in total
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
63
Pubs (1 yr)
P/LP submissions
P/LP missense
1.05
LOEUF
LOF
Mechanism· G2P
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GeneReview available — PROM1
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.05LOEUF
pLI 0.000
Z-score 1.26
OE 0.80 (0.621.05)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
-0.61Z-score
OE missense 1.08 (1.001.17)
478 obs / 441.8 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.80 (0.621.05)
00.351.4
Missense OE?1.08 (1.001.17)
00.61.4
Synonymous OE?0.99
01.21.6
LoF obs/exp: 39 / 48.5Missense obs/exp: 478 / 441.8Syn Z: 0.11

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PROM1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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