PRKRA

Chr 2AR

protein activator of interferon induced protein kinase EIF2AK2

Also known as: DYT16, HSD14, PACT, RAX

This gene encodes a protein kinase that activates PKR leading to translation inhibition and apoptosis, and is required for siRNA production by DICER1. Mutations cause dystonia 16, an autosomal recessive movement disorder. The gene shows moderate constraint against loss-of-function variants (LOEUF 0.558), suggesting some intolerance to complete loss of function.

GeneReviewsOMIMResearchSummary from RefSeq, OMIM, UniProt
DNmechanismARLOEUF 0.561 OMIM phenotype
Clinical SummaryPRKRA
Population Constraint (gnomAD)
Constrained for loss-of-function variants (OE-LoF 0.22) despite low pLI — interpret in context.
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GeneReview available — PRKRA
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
0.56LOEUF
pLI 0.417
Z-score 2.71
OE 0.22 (0.100.56)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
1.58Z-score
OE missense 0.65 (0.550.76)
103 obs / 159.0 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.22 (0.100.56)
00.351.4
Missense OE0.65 (0.550.76)
00.61.4
Synonymous OE0.83
01.21.6
LoF obs/exp: 3 / 13.9Missense obs/exp: 103 / 159.0Syn Z: 0.97
DN
0.6357th %ile
GOF
0.5269th %ile
LOF
0.50top 25%

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PRKRA · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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