PRKN

Chr 6AR

parkin RBR E3 ubiquitin protein ligase

Also known as: AR-JP, LPRS2, PARK2, PDJ

The precise function of this gene is unknown; however, the encoded protein is a component of a multiprotein E3 ubiquitin ligase complex that mediates the targeting of substrate proteins for proteasomal degradation. Mutations in this gene are known to cause Parkinson disease and autosomal recessive juvenile Parkinson disease. Alternative splicing of this gene produces multiple transcript variants encoding distinct isoforms. Additional splice variants of this gene have been described but currently lack transcript support. [provided by RefSeq, Jul 2008]

OMIMResearchGenerating clinical summary…
ARLOEUF 0.863 OMIM phenotypes
Clinical SummaryPRKN
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Gene-Disease Validity (ClinGen)
Parkinson disease · ARDefinitive

Definitive — sufficient evidence for diagnostic panels

Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
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Clinical Trials
3 active or recruiting trials — potential therapeutic options may be available

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.86LOEUF
pLI 0.000
Z-score 2.10
OE 0.55 (0.360.86)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
-0.86Z-score
OE missense 1.15 (1.041.26)
310 obs / 270.1 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.55 (0.360.86)
00.351.4
Missense OE?1.15 (1.041.26)
00.61.4
Synonymous OE?1.15
01.21.6
LoF obs/exp: 14 / 25.4Missense obs/exp: 310 / 270.1Syn Z: -1.23

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PRKN · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.