PRKDC

Chr 8AR

protein kinase, DNA-activated, catalytic subunit

Also known as: DNA-PKC, DNA-PKcs, DNAPK, DNAPKc, DNPK1, HYRC, HYRC1, IMD26

This gene encodes the catalytic subunit of the DNA-dependent protein kinase (DNA-PK). It functions with the Ku70/Ku80 heterodimer protein in DNA double strand break repair and recombination. The protein encoded is a member of the PI3/PI4-kinase family.[provided by RefSeq, Jul 2010]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Immunodeficiency 26, with or without neurologic abnormalitiesMIM #615966
AR

Clinical highlights

Gene-disease validity (ClinGen)
severe combined immunodeficiency due to DNA-PKcs deficiency · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
1
Active trials
109
Pubs (1 yr)
P/LP submissions
P/LP missense
0.05
LOEUF· LoF intol.
LOF
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.05LOEUF
pLI 1.000
Z-score 12.80
OE 0.02 (0.010.05)
Highly constrained

Among the most LoF-intolerant genes (~top 3%)

Missense Constraint?
2.76Z-score
OE missense 0.83 (0.800.86)
1727 obs / 2081.0 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.02 (0.010.05)
00.351.4
Missense OE?0.83 (0.800.86)
00.61.4
Synonymous OE?1.05
01.21.6
LoF obs/exp: 5 / 200.5Missense obs/exp: 1727 / 2081.0Syn Z: -1.09

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PRKDC · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.