PRKCQ

Chr 10

protein kinase C theta

Also known as: PRKCT, nPKC-theta

Protein kinase C theta (PRKCQ) encodes a calcium-independent serine/threonine protein kinase that is essential for T-cell activation, proliferation, and survival by phosphorylating multiple targets including transcription factors NF-kappaB and AP-1, and also functions in platelet signaling and insulin pathway regulation. The gene is highly constrained against loss-of-function variants (LOEUF 0.391), but specific disease associations with PRKCQ mutations have not been established in the provided data. An autosomal inheritance pattern would be expected for this autosomal gene if disease-causing variants are identified.

OMIMResearchSummary from RefSeq, UniProt
MultiplemechanismLOEUF 0.39
Clinical SummaryPRKCQ
Population Constraint (gnomAD)
Constrained for loss-of-function variants (OE-LoF 0.23) despite low pLI — interpret in context.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
0.39LOEUF
pLI 0.297
Z-score 4.69
OE 0.23 (0.140.39)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
2.36Z-score
OE missense 0.68 (0.610.75)
283 obs / 418.8 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios
LoF OE0.23 (0.140.39)
00.351.4
Missense OE0.68 (0.610.75)
00.61.4
Synonymous OE1.02
01.21.6
LoF obs/exp: 10 / 43.3Missense obs/exp: 283 / 418.8Syn Z: -0.23
DN
0.6258th %ile
GOF
0.6639th %ile
LOF
0.4430th %ile

This gene has evidence for multiple mechanisms of pathogenicity (gain-of-function and dominant-negative). Both the Badonyi & Marsh prediction and the broader genomic evidence point to gain-of-function as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

GOFprediction above median
DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PRKCQ · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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