PRKCB

Chr 16

protein kinase C beta

Also known as: PKC-beta, PKCB, PKCI(2), PKCbeta, PRKCB1, PRKCB2

The protein kinase C beta (PRKCB) gene encodes a calcium-activated serine/threonine kinase that regulates B-cell receptor signaling, insulin signaling, glucose transport, and endothelial cell function. This gene is extremely intolerant to loss-of-function variants (pLI near 1.0, LOEUF 0.081), but no specific Mendelian disease has been definitively associated with PRKCB mutations in humans. The high constraint scores suggest that mutations would likely be pathogenic if identified, but the inheritance pattern and clinical phenotype remain to be established.

OMIMResearchSummary from RefSeq, UniProt
LOFmechanismLOEUF 0.08
Clinical SummaryPRKCB
Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 1.00). One damaged copy is likely sufficient to cause disease.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Dual constrained — LoF & missense intolerant
LoF Constraint
0.08LOEUF
pLI 1.000
Z-score 5.62
OE 0.00 (0.000.08)
Highly constrained

Among the most LoF-intolerant genes (~top 3%)

Missense Constraint
3.99Z-score
OE missense 0.45 (0.390.50)
182 obs / 408.9 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios
LoF OE0.00 (0.000.08)
00.351.4
Missense OE0.45 (0.390.50)
00.61.4
Synonymous OE0.97
01.21.6
LoF obs/exp: 0 / 36.8Missense obs/exp: 182 / 408.9Syn Z: 0.30
DN
0.4189th %ile
GOF
0.5758th %ile
LOF
0.65top 25%

The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).

LOFprediction above median · LOEUF 0.08

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PRKCB · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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