PRKAA2

Chr 1

protein kinase AMP-activated catalytic subunit alpha 2

The protein encoded by this gene is the alpha-2 catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor that phosphorylates and regulates key enzymes in cellular metabolism, autophagy, and transcription in response to cellular energy stress. Mutations cause familial Wolff-Parkinson-White syndrome with hypertrophic cardiomyopathy, inherited in an autosomal dominant pattern. This gene is highly intolerant to loss-of-function mutations, affecting cardiac conduction and energy homeostasis.

OMIMResearchSummary from RefSeq, UniProt
DNmechanismLOEUF 0.92
Clinical SummaryPRKAA2
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
Some data sources returned errors (1)

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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.92LOEUF
pLI 0.000
Z-score 1.88
OE 0.61 (0.410.92)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
1.99Z-score
OE missense 0.68 (0.610.76)
207 obs / 304.5 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.61 (0.410.92)
00.351.4
Missense OE0.68 (0.610.76)
00.61.4
Synonymous OE0.93
01.21.6
LoF obs/exp: 16 / 26.4Missense obs/exp: 207 / 304.5Syn Z: 0.59
DN
0.7033th %ile
GOF
0.6346th %ile
LOF
0.3647th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PRKAA2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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