PPP1R3B

Chr 8

protein phosphatase 1 regulatory subunit 3B

Also known as: GL, PPP1R4, PTG

This gene encodes the catalytic subunit of the serine/theonine phosphatase, protein phosphatase-1. The encoded protein is expressed in liver and skeletal muscle tissue and may be involved in regulating glycogen synthesis in these tissues. This gene may be a involved in type 2 diabetes and maturity-onset diabetes of the young. Alternate splicing results in multiple transcript variants that encode the same protein.[provided by RefSeq, Jan 2011]

0
Active trials
0
Pathogenic / LP
0
ClinVar variants
8
Pubs (1 yr)
-1.1
Missense Z
0.99
LOEUF
Clinical SummaryPPP1R3B
Population Constraint (gnomAD)
Low constraint (pLI 0.07) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.99LOEUF
pLI 0.065
Z-score 1.60
OE 0.38 (0.170.99)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
-1.11Z-score
OE missense 1.25 (1.111.40)
198 obs / 158.7 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.38 (0.170.99)
00.351.4
Missense OE1.25 (1.111.40)
00.61.4
Synonymous OE1.14
01.21.6
LoF obs/exp: 3 / 7.8Missense obs/exp: 198 / 158.7Syn Z: -0.87
DN
DN
0.74top 25%
GOF
0.4875th %ile
LOF
0.3844th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

PPP1R3B · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
Landmark / reviewRecent case evidence
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC