POU4F1

Chr 13AD

POU class 4 homeobox 1

Also known as: ATITHS, BRN3A, Oct-T1, RDC-1, brn-3A

This gene encodes a neural transcription factor that regulates gene expression involved in neuronal differentiation, survival, and process outgrowth, with major developmental effects in somatosensory neurons and brainstem motor control nuclei. Mutations cause autosomal dominant sensorineural hearing loss (DFNA15), typically presenting in adulthood with progressive hearing impairment. The gene is highly constrained against loss-of-function variants, indicating that such mutations are likely to have significant clinical consequences.

OMIMResearchSummary from RefSeq, UniProt
LOFmechanismADLOEUF 0.421 OMIM phenotype
Clinical SummaryPOU4F1
Population Constraint (gnomAD)
Moderately constrained gene (pLI 0.89) — some intolerance to loss-of-function variants.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
0.42LOEUF
pLI 0.888
Z-score 2.47
OE 0.00 (0.000.42)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
2.45Z-score
OE missense 0.46 (0.390.56)
77 obs / 165.8 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios
LoF OE0.00 (0.000.42)
00.351.4
Missense OE0.46 (0.390.56)
00.61.4
Synonymous OE1.08
01.21.6
LoF obs/exp: 0 / 7.1Missense obs/exp: 77 / 165.8Syn Z: -0.53
Curated Mechanism (G2P)Gene2Phenotype (DDG2P) ↗
strongPOU4F1-related ataxia, intention tremor, and hypotonia syndromeLOFAD
DN
0.4289th %ile
GOF
0.2796th %ile
LOF
0.87top 5%

The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).

LOFprediction above median · 1 literature citation · LOEUF 0.42

Literature Evidence

LOFHaploinsufficiency of POU4F1 causes an ataxia syndrome with hypotonia and intention tremor.PMID:33783914

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

POU4F1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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