POP4

Chr 19

POP4 ribonuclease P/MRP subunit

Also known as: RPP29

The protein is a component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends, and also functions in mitochondrial RNA processing complexes. Mutations cause autosomal recessive severe combined immunodeficiency with microcephaly, growth retardation, and sensitivity to ionizing radiation (SCID-MGR). This gene is highly constrained against loss-of-function variants, indicating that complete loss of protein function is likely incompatible with normal development.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
3
Pubs (1 yr)
10
P/LP submissions
0%
P/LP missense
1.21
LOEUF
Mechanism
Clinical SummaryPOP4
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
10 unique Pathogenic / Likely Pathogenic· 45 VUS of 77 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.21LOEUF
pLI 0.000
Z-score 1.03
OE 0.69 (0.421.21)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.13Z-score
OE missense 0.97 (0.841.12)
129 obs / 133.3 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.69 (0.421.21)
00.351.4
Missense OE0.97 (0.841.12)
00.61.4
Synonymous OE1.13
01.21.6
LoF obs/exp: 9 / 13.0Missense obs/exp: 129 / 133.3Syn Z: -0.77

ClinVar Variant Classifications

77 submitted variants in ClinVar

Classification Summary

Pathogenic8
Likely Pathogenic2
VUS45
Likely Benign4
8
Pathogenic
2
Likely Pathogenic
45
VUS
4
Likely Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
8
0
8
Likely Pathogenic
0
0
2
0
2
VUS
0
41
4
0
45
Likely Benign
0
3
1
0
4
Benign
0
0
0
0
0
Total04415059

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

POP4 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →
Key Publications
Landmark & review papers · by relevance
PubMed
Top 2 results · since 2015Search PubMed ↗
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC