POGLUT2

Chr 13

protein O-glucosyltransferase 2

Also known as: EP58, ERp58, KDEL1, KDELC1

This protein is an endoplasmic reticulum glucosyltransferase that modifies extracellular EGF repeats of proteins including NOTCH1, NOTCH3, and fibrillin proteins, potentially regulating Notch signaling and protein transport to the plasma membrane. Mutations cause autosomal recessive limb-girdle muscular dystrophy type R21, which presents with progressive muscle weakness affecting the shoulder and hip girdle muscles. The gene shows no constraint against loss-of-function variants, consistent with recessive inheritance where heterozygous carriers are typically unaffected.

OMIMResearchSummary from RefSeq, UniProt
DNmechanismLOEUF 0.99
Clinical SummaryPOGLUT2
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.99LOEUF
pLI 0.000
Z-score 1.61
OE 0.66 (0.450.99)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
0.02Z-score
OE missense 1.00 (0.901.10)
273 obs / 273.7 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.66 (0.450.99)
00.351.4
Missense OE1.00 (0.901.10)
00.61.4
Synonymous OE0.96
01.21.6
LoF obs/exp: 17 / 25.8Missense obs/exp: 273 / 273.7Syn Z: 0.30
DN
0.6647th %ile
GOF
0.6053th %ile
LOF
0.3162th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

POGLUT2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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