PLP1

Chr XXLR

proteolipid protein 1

Also known as: GPM6C, HLD1, MMPL, PLP, PLP/DM20, PMD, SPG2

This gene encodes a transmembrane proteolipid protein that is the predominant component of myelin. The encoded protein may play a role in the compaction, stabilization, and maintenance of myelin sheaths, as well as in oligodendrocyte development and axonal survival. Mutations in this gene cause Pelizaeus-Merzbacher disease and spastic paraplegia type 2. Alternatively splicing results in multiple transcript variants, including the DM20 splice variant. [provided by RefSeq, Feb 2015]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Pelizaeus-Merzbacher diseaseMIM #312080
XLR
Spastic paraplegia 2, X-linkedMIM #312920
XLR
UniProtLeukodystrophy, hypomyelinating, 1

Clinical highlights

Gene-disease validity (ClinGen)
Pelizaeus-Merzbacher spectrum disorder · XLDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
87
Pubs (1 yr)
P/LP submissions
P/LP missense
0.35
LOEUF
LOF
Mechanism· G2P
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GeneReview available — PLP1
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.35LOEUF
pLI 0.928
Z-score 2.69
OE 0.00 (0.000.35)
Highly constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
2.04Z-score
OE missense 0.44 (0.340.56)
45 obs / 103.3 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.00 (0.000.35)
00.351.4
Missense OE?0.44 (0.340.56)
00.61.4
Synonymous OE?1.03
01.21.6
LoF obs/exp: 0 / 8.4Missense obs/exp: 45 / 103.3Syn Z: -0.14

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PLP1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.