PLN

Chr 6AD

phospholamban

Also known as: CMD1P, CMH18, PLB

The protein encoded by this gene is found as a pentamer and is a major substrate for the cAMP-dependent protein kinase in cardiac muscle. The encoded protein is an inhibitor of cardiac muscle sarcoplasmic reticulum Ca(2+)-ATPase in the unphosphorylated state, but inhibition is relieved upon phosphorylation of the protein. The subsequent activation of the Ca(2+) pump leads to enhanced muscle relaxation rates, thereby contributing to the inotropic response elicited in heart by beta-agonists. The encoded protein is a key regulator of cardiac diastolic function. Mutations in this gene are a cause of inherited human dilated cardiomyopathy with refractory congestive heart failure, and also familial hypertrophic cardiomyopathy. [provided by RefSeq, Apr 2016]

Primary Disease Associations & Inheritance

Cardiomyopathy, dilated, 1PMIM #609909
Cardiomyopathy, hypertrophic, 18MIM #613874
AD
UniProtCardiomyopathy, familial hypertrophic, 18
208
ClinVar variants
41
Pathogenic / LP
0.45
pLI score
2
Active trials
Clinical SummaryPLN
🧬
Gene-Disease Validity (ClinGen)
arrhythmogenic right ventricular cardiomyopathy · ADModerate

Moderate evidence — consider for supplementary testing

2 total gene-disease associations curated

Population Constraint (gnomAD)
Constrained for loss-of-function variants (OE-LoF 0.00) despite low pLI — interpret in context.
📋
ClinVar Variants
41 Pathogenic / Likely Pathogenic· 111 VUS of 208 total submissions
💊
Clinical Trials
2 active or recruiting trials — potential therapeutic options may be available

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?LOEUF (Loss-of-function Observed/Expected Upper bound Fraction) is the upper bound of the 90% CI for LoF OE — the preferred gnomAD v4 metric. Lower = more intolerant to LoF. LOEUF < 0.35 = highly constrained.
1.56LOEUF
pLI 0.449
Z-score 1.13
OE 0.00 (0.001.56)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?Missense Z-score: standard deviations fewer missense variants observed vs. expected. Z > 3.09 (p < 0.001) = gene does not tolerate missense variation. OE missense < 0.6 is also considered constrained.
0.62Z-score
OE missense 0.67 (0.470.98)
19 obs / 28.4 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?Shaded band = 90% confidence interval. Vertical tick = point estimate. Grey threshold line = gnomAD constraint cutoff for that variant class.
LoF OE?Ratio of observed to expected LoF variants. Upper CI bound (LOEUF) ≤ 0.35 = strong LoF constraint signal.0.00 (0.001.56)
00.351.4
Missense OE?Ratio of observed to expected missense variants. OE ≤ 0.6 = fewer missense variants than expected by chance.0.67 (0.470.98)
00.61.4
Synonymous OE?Control metric — synonymous variants are largely neutral and expected near OE = 1.0. Significant deviation may indicate annotation issues.0.53
01.21.6
LoF obs/exp: 0 / 1.5Missense obs/exp: 19 / 28.4Syn Z: 1.14

ClinVar Variant Classifications

208 submitted variants in ClinVar

Classification Summary

Pathogenic33
Likely Pathogenic8
VUS111
Likely Benign31
Benign15
Conflicting10
33
Pathogenic
8
Likely Pathogenic
111
VUS
31
Likely Benign
15
Benign
10
Conflicting

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
4
2
27
0
33
Likely Pathogenic
1
1
6
0
8
VUS
8
44
59
0
111
Likely Benign
0
1
15
15
31
Benign
0
0
15
0
15
Conflicting
10
Total134812215208

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

PLN · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Gene2Phenotype Curations

PLN-related intrinsic cardiomyopathy

definitive
ADUndeterminedAltered Gene Product Structure, Decreased Gene Product Level
Cardiac
G2P ↗
frameshift variantstop gainedmissense variantinframe deletion

Gene2Phenotype curations · DECIPHER consortium patient cohort (public variants) · deciphergenomics.org

OMIM — Genotype-Phenotype Relationships

1 OMIM entry

PHOSPHOLAMBAN; PLN
MIM #172405 · *

Cardiomyopathy, dilated, 1P

MIM #609909

Molecular basis of disorder known

Cardiomyopathy, hypertrophic, 18

MIM #613874

Molecular basis of disorder known

Autosomal dominant
📖
GeneReview available — PLN
Authoritative clinical overview · NCBI Bookshelf · Recommended first read
Open GeneReview ↗
Clinical Literature
Landmark / reviewRecent case evidence