PLBD1

Chr 12

phospholipase B domain containing 1

Also known as: LyLAP, PLBL1

The protein functions as a lysosomal processive monoaminopeptidase that preferentially cleaves hydrophobic amino acids, particularly leucine residues, and plays a key role in degrading hydrophobic transmembrane domains within lysosomes. Mutations cause neurodegenerative disorders with childhood onset, including developmental delay, intellectual disability, and progressive neurological decline. This follows autosomal recessive inheritance and the gene shows tolerance to loss-of-function variants in the general population.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
7
Pubs (1 yr)
41
P/LP submissions
0%
P/LP missense
1.26
LOEUF
Mechanism
Clinical SummaryPLBD1
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
41 unique Pathogenic / Likely Pathogenic· 79 VUS of 136 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.26LOEUF
pLI 0.000
Z-score 0.44
OE 0.91 (0.671.26)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.78Z-score
OE missense 0.87 (0.790.97)
253 obs / 290.3 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.91 (0.671.26)
00.351.4
Missense OE0.87 (0.790.97)
00.61.4
Synonymous OE1.01
01.21.6
LoF obs/exp: 26 / 28.5Missense obs/exp: 253 / 290.3Syn Z: -0.09

ClinVar Variant Classifications

136 submitted variants in ClinVar

Classification Summary

Pathogenic38
Likely Pathogenic3
VUS79
Likely Benign5
38
Pathogenic
3
Likely Pathogenic
79
VUS
5
Likely Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
38
0
38
Likely Pathogenic
0
0
3
0
3
VUS
0
76
3
0
79
Likely Benign
0
5
0
0
5
Benign
0
0
0
0
0
Total081440125

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

PLBD1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC