PIP4P2

Chr 8

phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2

Also known as: TMEM55A

TMEM55A catalyzes the hydrolysis of phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 4-phosphate and regulates phagocytosis by controlling phagosomal phospholipid accumulation. Based on the provided information, no specific diseases have been definitively associated with mutations in this gene, and the inheritance pattern is not established. The gene appears to be tolerant to loss-of-function variants based on constraint metrics.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
1
Pubs (1 yr)
34
P/LP submissions
0%
P/LP missense
0.89
LOEUF
Mechanism
Clinical SummaryPIP4P2
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
34 unique Pathogenic / Likely Pathogenic· 38 VUS of 85 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.89LOEUF
pLI 0.000
Z-score 1.88
OE 0.50 (0.290.89)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
1.21Z-score
OE missense 0.72 (0.610.85)
106 obs / 147.3 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.50 (0.290.89)
00.351.4
Missense OE0.72 (0.610.85)
00.61.4
Synonymous OE0.82
01.21.6
LoF obs/exp: 8 / 16.1Missense obs/exp: 106 / 147.3Syn Z: 1.03

ClinVar Variant Classifications

85 submitted variants in ClinVar

Classification Summary

Pathogenic34
VUS38
Likely Benign1
34
Pathogenic
38
VUS
1
Likely Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
34
0
34
Likely Pathogenic
0
0
0
0
0
VUS
0
35
3
0
38
Likely Benign
0
0
1
0
1
Benign
0
0
0
0
0
Total03538073

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

PIP4P2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →
Key Publications
Landmark & review papers · by relevance
PubMed
Top 1 results · since 2015Search PubMed ↗
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC

No open access results found