PIK3R4

Chr 3

phosphoinositide-3-kinase regulatory subunit 4

Also known as: VPS15, p150

Predicted to enable protein serine/threonine kinase activity. Involved in several processes, including early endosome to late endosome transport; phosphatidylinositol 3-kinase/protein kinase B signal transduction; and phosphatidylinositol-3-phosphate biosynthetic process. Located in ciliary basal body; intercellular bridge; and late endosome. Part of phosphatidylinositol 3-kinase complex, class III. [provided by Alliance of Genome Resources, Jul 2025]

OMIMResearchGenerating clinical summary…
LOEUF 0.39
Clinical SummaryPIK3R4
Population Constraint (gnomAD)
Constrained for loss-of-function variants (OE-LoF 0.26) despite low pLI — interpret in context.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.39LOEUF
pLI 0.025
Z-score 5.43
OE 0.26 (0.170.39)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
2.48Z-score
OE missense 0.74 (0.690.80)
548 obs / 737.4 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.26 (0.170.39)
00.351.4
Missense OE?0.74 (0.690.80)
00.61.4
Synonymous OE?0.99
01.21.6
LoF obs/exp: 16 / 62.3Missense obs/exp: 548 / 737.4Syn Z: 0.17

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PIK3R4 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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