PIK3R2

Chr 19AD

phosphoinositide-3-kinase regulatory subunit 2

Also known as: MPPH, MPPH1, P85B, p85, p85-BETA, p85beta

Phosphatidylinositol 3-kinase (PI3K) is a lipid kinase that phosphorylates phosphatidylinositol and similar compounds, creating second messengers important in growth signaling pathways. PI3K functions as a heterodimer of a regulatory and a catalytic subunit. The protein encoded by this gene is a regulatory component of PI3K. Three transcript variants, one protein coding and the other two non-protein coding, have been found for this gene. [provided by RefSeq, Apr 2019]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 1MIM #603387
AD

Clinical highlights

Gene-disease validity (ClinGen)
overgrowth syndrome and/or cerebral malformations due to abnormalities in MTOR pathway genes · ADDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Gain of function is the curated mechanism (Gene2Phenotype), so a variant that simply removes the protein may not be the pathogenic class here — missense variants in functional domains often carry more weight.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
53
Pubs (1 yr)
P/LP submissions
P/LP missense
0.49
LOEUF
GOF
Mechanism· G2P
📖
GeneReview available — PIK3R2
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.49LOEUF
pLI 0.016
Z-score 3.88
OE 0.29 (0.180.49)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
2.33Z-score
OE missense 0.68 (0.620.75)
295 obs / 431.3 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.29 (0.180.49)
00.351.4
Missense OE?0.68 (0.620.75)
00.61.4
Synonymous OE?0.93
01.21.6
LoF obs/exp: 10 / 34.7Missense obs/exp: 295 / 431.3Syn Z: 0.80

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PIK3R2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

VCEP specificationsBrain MalformationsReleased
Specifications ↗Panel ↗

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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