PIK3C3

Chr 18

phosphatidylinositol 3-kinase catalytic subunit type 3

Also known as: VPS34, Vps34, hVps34

Enables 1-phosphatidylinositol-3-kinase activity. Involved in several processes, including early endosome to late endosome transport; macroautophagy; and positive regulation of natural killer cell mediated cytotoxicity. Acts upstream of or within autophagy and positive regulation of protein lipidation. Located in autolysosome; late endosome; and midbody. Is active in plasma membrane. [provided by Alliance of Genome Resources, Jun 2026]

OMIMResearchGenerating clinical summary…
0
Active trials
50
Pubs (1 yr)
P/LP submissions
P/LP missense
0.67
LOEUF
Multiple*
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.67LOEUF
pLI 0.000
Z-score 3.55
OE 0.48 (0.350.67)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
2.44Z-score
OE missense 0.68 (0.630.75)
325 obs / 474.6 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.48 (0.350.67)
00.351.4
Missense OE?0.68 (0.630.75)
00.61.4
Synonymous OE?1.05
01.21.6
LoF obs/exp: 26 / 54.2Missense obs/exp: 325 / 474.6Syn Z: -0.52

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PIK3C3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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