PIGT

Chr 20

phosphatidylinositol glycan anchor biosynthesis class T

Also known as: CGI-06, MCAHS3, NDAP, PIG-T, PNH2

This gene encodes a protein that is involved in glycosylphosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is a glycolipid found on many blood cells and serves to anchor proteins to the cell surface. This protein is an essential component of the multisubunit enzyme, GPI transamidase. GPI transamidase mediates GPI anchoring in the endoplasmic reticulum, by catalyzing the transfer of fully assembled GPI units to proteins. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, May 2012]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtMultiple congenital anomalies-hypotonia-seizures syndrome 3
UniProtParoxysmal nocturnal hemoglobinuria 2

Clinical highlights

Gene-disease validity (ClinGen)
multiple congenital anomalies-hypotonia-seizures syndrome 3 · ARDefinitivesufficient evidence for diagnostic panels
1
Active trials
Pubs (1 yr)
P/LP submissions
P/LP missense
0.95
LOEUF
Mechanism
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.95LOEUF
pLI 0.000
Z-score 1.78
OE 0.65 (0.450.95)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
0.28Z-score
OE missense 0.96 (0.871.05)
326 obs / 340.4 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.65 (0.450.95)
00.351.4
Missense OE?0.96 (0.871.05)
00.61.4
Synonymous OE?1.13
01.21.6
LoF obs/exp: 19 / 29.4Missense obs/exp: 326 / 340.4Syn Z: -1.25

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PIGT · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.