PIGO

Chr 9AR

phosphatidylinositol glycan anchor biosynthesis class O

Also known as: HPMRS2, hGPCR43

This gene encodes a protein that is involved in glycosylphosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is a glycolipid which contains three mannose molecules in its core backbone. The GPI-anchor is found on many blood cells and serves to anchor proteins to the cell surface. This protein is involved in the transfer of ethanolaminephosphate (EtNP) to the third mannose in GPI. At least three alternatively spliced transcripts encoding two distinct isoforms have been found for this gene. [provided by RefSeq, Jan 2011]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Hyperphosphatasia with impaired intellectual development syndrome 2MIM #614749
AR

Clinical highlights

Gene-disease validity (ClinGen)
complex neurodevelopmental disorder · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
8
Pubs (1 yr)
P/LP submissions
P/LP missense
0.81
LOEUF
LOF
Mechanism· G2P

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.81LOEUF
pLI 0.000
Z-score 2.50
OE 0.57 (0.410.81)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
0.96Z-score
OE missense 0.89 (0.830.96)
549 obs / 615.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.57 (0.410.81)
00.351.4
Missense OE?0.89 (0.830.96)
00.61.4
Synonymous OE?1.08
01.21.6
LoF obs/exp: 23 / 40.1Missense obs/exp: 549 / 615.8Syn Z: -0.94

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PIGO · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →