PIGC

Chr 1AR

phosphatidylinositol glycan anchor biosynthesis class C

Also known as: GPI2, GPIBD16, MRT62

This gene encodes an endoplasmic reticulum associated protein that is involved in glycosylphosphatidylinositol (GPI) lipid anchor biosynthesis. The GPI lipid anchor is a glycolipid found on many blood cells and serves to anchor proteins to the cell surface. The encoded protein is one subunit of the GPI N-acetylglucosaminyl (GlcNAc) transferase that transfers GlcNAc to phosphatidylinositol (PI) on the cytoplasmic side of the endoplasmic reticulum. Two alternatively spliced transcripts that encode the same protein have been found for this gene. A pseudogene on chromosome 11 has also been characterized. [provided by RefSeq, Jul 2008]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Glycosylphosphatidylinositol biosynthesis defect 16MIM #617816
AR

Clinical highlights

Gene-disease validity (ClinGen)
congenital disorder of glycosylation · ARLimitednot for standalone diagnostic reporting
0
Active trials
4
Pubs (1 yr)
P/LP submissions
P/LP missense
1.06
LOEUF
DN
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.06LOEUF
pLI 0.006
Z-score 1.46
OE 0.50 (0.261.06)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
0.79Z-score
OE missense 0.83 (0.720.95)
137 obs / 165.5 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.50 (0.261.06)
00.351.4
Missense OE?0.83 (0.720.95)
00.61.4
Synonymous OE?0.63
01.21.6
LoF obs/exp: 5 / 10.0Missense obs/exp: 137 / 165.5Syn Z: 2.34

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PIGC · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →