PHIP

Chr 6

PHIP subunit of CUL4-Ring ligase complex

Also known as: BRWD2, CHUJANS, DCAF14, DIDOD, RepID, WDR11, ndrp

This gene encodes a protein that binds to the insulin receptor substrate 1 protein and regulates glucose transporter translocation in skeletal muscle cells. The encoded protein may also regulate growth and survival of pancreatic beta cells. Elevated copy number of this gene may be associated with melanoma severity and the encoded protein may promote melanoma metastasis in human patients. [provided by RefSeq, Oct 2016]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtChung-Jansen syndrome

Clinical highlights

Gene-disease validity (ClinGen)
PHIP-related behavioral problems-intellectual disability-obesity-dysmorphic features syndrome · ADDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
2
Active trials
124
Pubs (1 yr)
P/LP submissions
P/LP missense
0.11
LOEUF· LoF intol.
LOF
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Dual constrained — LoF & missense intolerant
LoF Constraint?
0.11LOEUF
pLI 1.000
Z-score 8.93
OE 0.06 (0.030.11)
Highly constrained

Among the most LoF-intolerant genes (~top 3%)

Missense Constraint?
5.14Z-score
OE missense 0.53 (0.490.57)
508 obs / 954.9 exp
Constrained

Extremely missense-constrained (top ~0.01%)

Observed / Expected Ratios?
LoF OE?0.06 (0.030.11)
00.351.4
Missense OE?0.53 (0.490.57)
00.61.4
Synonymous OE?0.98
01.21.6
LoF obs/exp: 6 / 104.6Missense obs/exp: 508 / 954.9Syn Z: 0.30

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PHIP · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.