PHF11

Chr 13

PHD finger protein 11

This gene encodes a protein containing a PHD-type zinc finger that acts as a positive regulator of Th1-type cytokine gene expression. The gene has been identified as a candidate gene for asthma in some studies. PHF11 shows low constraint against loss-of-function variants (LOEUF 1.278), suggesting tolerance to such mutations.

OMIMResearchSummary from RefSeq, UniProt
DNmechanismLOEUF 1.28
Clinical SummaryPHF11
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
Some data sources returned errors (1)

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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.28LOEUF
pLI 0.000
Z-score 0.73
OE 0.80 (0.521.28)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
1.04Z-score
OE missense 0.77 (0.660.89)
121 obs / 157.6 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.80 (0.521.28)
00.351.4
Missense OE0.77 (0.660.89)
00.61.4
Synonymous OE0.88
01.21.6
LoF obs/exp: 13 / 16.2Missense obs/exp: 121 / 157.6Syn Z: 0.68
DN
0.6259th %ile
GOF
0.5170th %ile
LOF
0.3649th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PHF11 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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