PGRMC2

Chr 4

progesterone receptor membrane component 2

Also known as: DG6, PMBP

Enables heme binding activity. Involved in adipose tissue development. Located in endoplasmic reticulum and nuclear envelope. [provided by Alliance of Genome Resources, Jul 2025]

OMIMResearchGenerating clinical summary…

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
12
Pubs (1 yr)
P/LP submissions
P/LP missense
0.59
LOEUF
Mechanism

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.59LOEUF
pLI 0.680
Z-score 2.30
OE 0.12 (0.040.59)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
0.84Z-score
OE missense 0.79 (0.680.93)
106 obs / 133.3 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.12 (0.040.59)
00.351.4
Missense OE?0.79 (0.680.93)
00.61.4
Synonymous OE?1.29
01.21.6
LoF obs/exp: 1 / 8.0Missense obs/exp: 106 / 133.3Syn Z: -1.70

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PGRMC2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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