PGM2L1

Chr 11AR

phosphoglucomutase 2 like 1

Also known as: BM32A, NEDHFS, PMMLP

Enables glucose-1,6-bisphosphate synthase activity. Predicted to be involved in glucose metabolic process. Predicted to be located in cytosol. [provided by Alliance of Genome Resources, Jul 2025]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Neurodevelopmental disorder with hypotonia, dysmorphic facies, and skin abnormalitiesMIM #620191
AR

Clinical highlights

Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
8
Pubs (1 yr)
P/LP submissions
P/LP missense
0.50
LOEUF
LOF
Mechanism· G2P

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.50LOEUF
pLI 0.026
Z-score 3.72
OE 0.29 (0.170.50)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
2.24Z-score
OE missense 0.65 (0.580.73)
214 obs / 328.2 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.29 (0.170.50)
00.351.4
Missense OE?0.65 (0.580.73)
00.61.4
Synonymous OE?0.86
01.21.6
LoF obs/exp: 9 / 31.5Missense obs/exp: 214 / 328.2Syn Z: 1.14

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PGM2L1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.