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PGBD3

Chr 10ADARSomatic

piggyBac transposable element derived 3

This gene is a member of a small family of genes derived from piggyBac transposable elements. The encoded protein contains a zinc-ribbon domain characteristic of transposon-derived proteins and may function as a regulator of transcription. Alternative splicing occurs between a splice site from exon 5 of the adjacent upstream gene 'excision repair cross-complementation group 6' (ERCC6, GeneID: 2074) and the 3' splice site upstream of the open reading frame (ORF) of this gene, which activates the alternative polyadenylation site downstream of the piggyback-derived-3 ORF. The resulting transcripts encode a fusion protein that shares sequence with the product of each individual gene. Pseudogenes for this gene are defined on chromosomes 4, 5 and 12. [provided by RefSeq, Mar 2016]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Premature ovarian failure 11MIM #616946
AD
?De Sanctis-Cacchione syndromeMIM #278800
AR
{Lung cancer, susceptibility to}MIM #211980
ADSomatic
{Macular degeneration, age-related, susceptibility to, 5}MIM #613761
Cerebrooculofacioskeletal syndrome 1MIM #214150
AR
Cockayne syndrome, type BMIM #133540
AR
Premature ovarian failure 11MIM #616946
AD
UV-sensitive syndrome 1MIM #600630
AR
0
Active trials
0
Pubs (1 yr)
P/LP submissions
P/LP missense
1.75
LOEUF
Mechanism
Some data sources returned errors (1)

ensembl: Error: Ensembl fetch failed: 400 for /lookup/symbol/homo_sapiens/PGBD3?content-type=application/json

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.75LOEUF
pLI 0.041
Z-score 0.49
OE 0.69 (0.271.75)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
0.49Z-score
OE missense 0.93 (0.841.02)
313 obs / 338.1 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.69 (0.271.75)
00.351.4
Missense OE?0.93 (0.841.02)
00.61.4
Synonymous OE?1.12
01.21.6
LoF obs/exp: 2 / 2.9Missense obs/exp: 313 / 338.1Syn Z: -1.05

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PGBD3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →